About
BIRL Proteomics Team
PTMKB is developed by the Biomedical Informatics & Engineering Research Laboratory (BIRL),
Lahore University of Management Sciences.
Meet the team
Publications
Showing 10 of 10 publications
2026PERCEPTRON-PTMKB: A Web Server for Residue-Based Post-Translational Modification Analysis and Propensity Scoring
A Faiz, M Shoaib, SU Chaudhary*
Journal of Molecular Biology 438 (6), 169709
Q1ProteomicsPost-Translational ModificationsIF: 4.7LINK
2026Allosteric Network Analysis Toolkit for Single-Domain Phosphoproteins
M Hamid, SU Chaudhary, A Pandini, SM Khan
Methods in Molecular Biology Protein Evolution. vol 2979
Q4ProteomicsProtein-Water NetworksIF: 0.95LINK
2025PERCEPTRON-XFMS: A Web Server for X-ray Foot Printing with Mass Spectrometry (XFMS) Data Analysis
M Hamid, MF Khalid, S Khan*, SU Chaudhary*
Journal of Molecular Biology 437 (15), 169127
Q1ProteomicsProtein-Water NetworksIF: 4.7LINK
2025Association of epilepsy and neurological impairments with homozygous recessive missense mutations found in the genes responsible for...
R Abid, H Nisar, SU Chaudhary, M Hamid, KI Sahibzada, S Firdous
Journal of Biomolecular Structure and Dynamics 43 (13), 6791-6802
Q2NeurosciencePublic HealthIF: 3.06LINK
2024Pharmacophore-assisted covalent docking identifies a potential covalent inhibitor for drug-resistant Genotype 3 variants of Hepatitis C Viral NS3/4...
K Iman, MU Mirza*, F Sadia, M Froeyen, JF Trant, SU Chaudhary*
Viruses 16 (8), 1250
Q1HCVProteomicsIF: 3.5LINK
2022The Solvation of the E. coli CheY Phosphorylation Site Mapped by XFMS
M Hamid, MF Khalid, SU Chaudhary*, S Khan*
International Journal of Molecular Sciences 23 (21), 12771
Q1ProteomicsProtein-Water NetworksIF: 5.6LINK
2022Determination of the repellent activity of trans-anethol and tea tree oil against Aedes aegypti and their interaction with AaegOBP1
L Ajmal, A Hamid, F Raza, SU Chaudhary, K Iman, S Ajmal, H Younas, R Khalid, M Iqbal, R Tasadduq*
Entomologia Experimentalis et Applicata 170: 547-554.
Q1ClimateProteomicsIF: 1.9LINK
2021PERCEPTRON - An open-source GPU-accelerated proteoform identification pipeline for top-down proteomics
MF Khalid†, K Iman†, A Ghafoor†, M Saboor, A Ali, U Muaz, AR Basharat, T Tahir, M Abubakar, MA Akhter, W Nabi, W Vanderbauwhede, F Ahmad, B Wajid, SU Chaudhary*
Nucleic Acids Research 49, 510-5
Q1ProteomicsMass SpectrometryIF: 19.16LINK
2019SPECTRUM - A MATLAB Toolbox for Identifying Proteins from Top-down Proteomics Data
AR Basharat, K Iman, Z Bibi, R Hussain, HG Kabir, A Shahid, M Humayun, HA Hayat, M Mustafa, M Shoaib, Z Ullah, S Zarina, S Ahmed, E Uddin, S Hamera, F Ahmad, SU...
Scientific Reports - Nature 9 (11267)
Q1ProteomicsMass SpectrometryIF: 4LINK
2007Database Search Analysis using Flipped Mass Spectrum in Top-down Proteomics
KH Kwon, SU Chaudhary, MH Hur, SH Kim, HS Kim, JS Yoo*
Molecular & Cellular Proteomics HUPO(2007):39
Q1ProteomicsMass SpectrometryIF: 10.3LINK